Transcript: lnc-PDCD4-1:1

Basic information

LNCipedia transcript ID: lnc-PDCD4-1:1 
LNCipedia gene ID: lnc-PDCD4-1
Ensembl Gene ID: ENSG00000232470
Ensembl Transcript ID: ENST00000416249
Location (hg38): chr10:110869743-110871594
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 401 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017869; ENST00000416249.1; RP11-313D6.3-001; OTTHUMT00000050345.1; NONHSAT016364
Alternative gene names: XLOC_008612; linc-PDCD4; ENSG00000232470.1; RP11-313D6.3; OTTHUMG00000019044.1; AL136368.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.2237 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDCD4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDCD4-1:1
3.1 lnc-PDCD4-1:1
4.0 lnc-PDCD4-1:1
4.1 lnc-PDCD4-1:1
5.0 lnc-PDCD4-1:1
5.1 lnc-SMC3-8:1
5.2 lnc-PDCD4-1:1