Transcript: lnc-PCSK1N-3:3

Basic information

LNCipedia transcript ID: lnc-PCSK1N-3:3 
LNCipedia gene ID: lnc-PCSK1N-3
Location (hg38): chrX:48775644-48801346
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1956 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000113659.1|MICT00000374468.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.8005 non-coding 
CPAT coding probability 15.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCSK1N-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PCSK1N-3:3
5.0 lnc-PCSK1N-3:3
5.1 lnc-PCSK1N-3:3
5.2 lnc-PCSK1N-3:3