Transcript: lnc-PCNX1-2:17

Basic information

LNCipedia transcript ID: lnc-PCNX1-2:17 
LNCipedia gene ID: lnc-PCNX1-2
Ensembl Gene ID: ENSG00000259153
Ensembl Transcript ID: ENST00000554032
Location (hg38): chr14:70810205-70815391
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554032.1; RP6-65G23.3-002; OTTHUMT00000412556.1; NONHSAT037593
Alternative gene names: ENSG00000259153.1; RP6-65G23.3; OTTHUMG00000171250.1; AC004816.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.5146 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCNX1-2:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCNX-2:1
4.0 lnc-PCNX-2:1
4.1 lnc-PCNX-2:1
5.0 lnc-PCNX-2:1
5.1 lnc-ACOT2-40:17
5.2 lnc-PCNX1-2:17