Transcript: lnc-PCDH7-5:1

Basic information

LNCipedia transcript ID: lnc-PCDH7-5:1 
LNCipedia gene ID: lnc-PCDH7-5
Location (hg38): chr4:32184349-32192710
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 202 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008033; NONHSAT095951
Alternative gene names: XLOC_003497; linc-DTHD1-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.5585 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH7-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH7-5:1
3.1 lnc-PCDH7-5:1
4.0 lnc-PCDH7-5:1
4.1 lnc-PCDH7-5:1
5.0 lnc-PCDH7-5:1
5.1 lnc-GABRB1-107:2
5.2 lnc-PCDH7-5:1