Transcript: lnc-PCDH10-6:1

Basic information

LNCipedia transcript ID: lnc-PCDH10-6:1 
LNCipedia gene ID: lnc-PCDH10-6
Ensembl Gene ID: ENSG00000249000
Ensembl Transcript ID: ENST00000504882
Location (hg38): chr4:134759399-134817289
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007628; ENST00000504882; ENST00000504882.1; CTD-2012I17.1-001; OTTHUMT00000364193.1; NONHSAT098362
Alternative gene names: XLOC_003695; linc-CCRN4L-16; ENSG00000249000; CTD-2012I17.1; ENSG00000249000.1; OTTHUMG00000161215.1; AC093722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1316 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH10-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH10-5:1
3.1 lnc-PCDH10-6:1
4.0 lnc-PCDH10-6:1
4.1 lnc-PCDH10-6:1
5.0 lnc-PCDH10-6:1
5.1 lnc-NOCT-23:1
5.2 lnc-PCDH10-6:1