Transcript: lnc-PCDH1-5:2

Basic information

LNCipedia transcript ID: lnc-PCDH1-5:2 
LNCipedia gene ID: lnc-PCDH1-5
Ensembl Gene ID: ENSG00000278925
Ensembl Transcript ID: ENST00000623837
Location (hg38): chr5:141825708-141826325
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 1
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623837.1
Alternative gene names: ENSG00000278925.1; AC005753.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -220.1423 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PCDH1-5:2
5.0 lnc-PCDH1-5:2
5.1 lnc-DIAPH1-12:2
5.2 lnc-PCDH1-5:2