Transcript: lnc-PCBD1-1:1

Basic information

LNCipedia transcript ID: lnc-PCBD1-1:1 
LNCipedia gene ID: lnc-PCBD1-1
Location (hg38): chr10:70862771-70866669
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 730 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000448452.1; RP11-432J9.5-001; OTTHUMT00000048532.1; NONHSAT013861
Alternative gene names: ENSG00000237998.1; RP11-432J9.5; OTTHUMG00000018420.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.6183 non-coding 
CPAT coding probability 3.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCBD1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCBD1-1:1
4.0 lnc-PCBD1-1:1
4.1 lnc-PCBD1-1:1
5.0 lnc-PCBD1-1:1
5.1 lnc-C10orf105-1:3
5.2 lnc-PCBD1-1:1