Transcript: lnc-PAXIP1-3:4

Basic information

LNCipedia transcript ID: lnc-PAXIP1-3:4 
LNCipedia gene ID: lnc-PAXIP1-3
Location (hg38): chr7:154024009-154057627
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 537 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000454405.1; AC006019.3-004; OTTHUMT00000322990.1; NONHSAT124308
Alternative gene names: ENSG00000203335.3; AC006019.3; OTTHUMG00000151520.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.7496 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAXIP1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAXIP1-3:4
4.0 lnc-PAXIP1-3:4
4.1 lnc-PAXIP1-3:4
5.0 lnc-PAXIP1-3:4
5.1 lnc-PAXIP1-3:4
5.2 lnc-PAXIP1-3:4