Transcript: lnc-PAX8-6:2

Basic information

LNCipedia transcript ID: lnc-PAX8-6:2 
LNCipedia gene ID: lnc-PAX8-6
Location (hg38): chr2:113706761-113708513
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1753 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA809:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.6123 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX8-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC016745.1-2:2
4.1 lnc-AC016745.1-2:2
5.0 lnc-AC016745.1-2:2
5.1 lnc-EN1-29:2
5.2 lnc-PAX8-6:2