Transcript: lnc-PAX8-6:1

Basic information

LNCipedia transcript ID: lnc-PAX8-6:1 
LNCipedia gene ID: lnc-PAX8-6
Location (hg38): chr2:113706793-113710239
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2370 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003380; NONHSAT073831
Alternative gene names: XLOC_002282; linc-PAX8-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0558 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX8-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016745.1-2:1
3.1 lnc-AC016745.1-2:1
4.0 lnc-AC016745.1-2:1
4.1 lnc-AC016745.1-2:1
5.0 lnc-AC016745.1-2:1
5.1 lnc-EN1-29:1
5.2 lnc-PAX8-6:1