Transcript: lnc-PASD1-1:1

Basic information

LNCipedia transcript ID: lnc-PASD1-1:1 
LNCipedia gene ID: lnc-PASD1-1
Ensembl Gene ID: ENSG00000214915
Ensembl Transcript ID: ENST00000454307
Location (hg38): chrX:151515551-151516245
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454307; ENST00000454307.1; XX-FW80269A6.1-001; OTTHUMT00000078422.1; NONHSAT139012
Alternative gene names: ENSG00000214915; XX-FW80269A6.1; ENSG00000214915.3; OTTHUMG00000032120.1; BX546450.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.5318 non-coding 
CPAT coding probability 4.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PASD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PASD1-1:1
3.1 lnc-PASD1-1:1
4.0 lnc-PASD1-1:1
4.1 lnc-PASD1-1:1
5.0 lnc-PASD1-1:1
5.1 lnc-MAGEA11-19:1
5.2 lnc-PASD1-1:1