Transcript: lnc-PAPD7-2:3

Basic information

LNCipedia transcript ID: lnc-PAPD7-2:3 
LNCipedia gene ID: lnc-PAPD7-2
Location (hg38): chr5:6775353-6777758
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1491 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT100223; FPKM1_group_24864_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 77.234 coding 
CPAT coding probability 9.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAPD7-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAPD7-2:3
4.0 lnc-PAPD7-2:3
4.1 lnc-PAPD7-2:3
5.0 lnc-PAPD7-2:3
5.1 lnc-CARD6-323:10
5.2 lnc-PAPD7-2:3