Transcript: lnc-PANK3-23:2

Basic information

LNCipedia transcript ID: lnc-PANK3-23:2 
LNCipedia gene ID: lnc-PANK3-23
Location (hg38): chr5:168528361-168529236
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 876 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000081953.1|ENCT00000365017.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -64.5293 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK3-23:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PANK3-23:2
5.0 lnc-PANK3-23:2
5.1 lnc-PDLIM7-124:2
5.2 lnc-PANK3-23:2