Transcript: lnc-PANK3-18:1

Basic information

LNCipedia transcript ID: lnc-PANK3-18:1 
LNCipedia gene ID: lnc-PANK3-18
Location (hg38): chr5:167838268-167838513
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 246 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: uc_176_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -352.2503 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK3-18:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PANK3-18:1
4.0 lnc-PANK3-18:1
4.1 lnc-PANK3-18:1
5.0 lnc-PANK3-18:1
5.1 lnc-PDLIM7-132:1
5.2 lnc-PANK3-18:1