Transcript: lnc-PAMR1-2:1

Basic information

LNCipedia transcript ID: lnc-PAMR1-2:1 
LNCipedia gene ID: lnc-PAMR1-2
Location (hg38): chr11:35605514-35613351
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 316 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT018794; FPKM1_group_4547_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6261 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAMR1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAMR1-2:1
4.0 lnc-PAMR1-2:1
4.1 lnc-PAMR1-2:1
5.0 lnc-PAMR1-2:1
5.1 lnc-TRAF6-12:1
5.2 lnc-PAMR1-2:1