Transcript: lnc-PAM-5:1

Basic information

LNCipedia transcript ID: lnc-PAM-5:1 
LNCipedia gene ID: lnc-PAM-5
Ensembl Gene ID: ENSG00000248261
Ensembl Transcript ID: ENST00000506058
Location (hg38): chr5:102144077-102146572
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 325 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009472; ENST00000506058; ENST00000506058.1; CTD-2333K2.1-001; OTTHUMT00000370331.1; NONHSAT103023
Alternative gene names: XLOC_004491; linc-PAM-5; ENSG00000248261; CTD-2333K2.1; ENSG00000248261.1; OTTHUMG00000162756.1; AC008948.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.0311 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAM-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAM-5:1
3.1 lnc-PAM-5:1
4.0 lnc-PAM-5:1
4.1 lnc-PAM-5:1
5.0 lnc-PAM-5:1
5.1 lnc-GPR150-92:2
5.2 lnc-PAM-5:1