Transcript: lnc-PAM-4:2

Basic information

LNCipedia transcript ID: lnc-PAM-4:2 
LNCipedia gene ID: lnc-PAM-4
Ensembl Gene ID: ENSG00000249017
Ensembl Transcript ID: ENST00000509656
Location (hg38): chr5:102505269-102505670
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 307 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009474; ENST00000509656.1; RP11-58B2.1-002; OTTHUMT00000370334.1; NONHSAT103029
Alternative gene names: XLOC_004492; linc-PAM-4; ENSG00000249017.1; RP11-58B2.1; OTTHUMG00000162758.1; AC094108.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.5153 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAM-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAM-4:2
3.1 lnc-PAM-4:2
4.0 lnc-PAM-4:2
4.1 lnc-PAM-4:2
5.0 lnc-PAM-4:2
5.1 lnc-GPR150-95:3
5.2 lnc-PAM-4:2