Transcript: lnc-PAFAH1B1-1:2

Basic information

LNCipedia transcript ID: lnc-PAFAH1B1-1:2 
LNCipedia gene ID: lnc-PAFAH1B1-1
Ensembl Gene ID: ENSG00000272911
Ensembl Transcript ID: ENST00000608984
Location (hg38): chr17:2688473-2688960
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 303 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608984.1
Alternative gene names: ENSG00000272911.1; RP11-74E22.6; AC005696.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.5934 non-coding 
CPAT coding probability 7.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAFAH1B1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAFAH1B1-1:2
4.0 lnc-PAFAH1B1-1:2
4.1 lnc-PAFAH1B1-1:2
5.0 lnc-PAFAH1B1-1:2
5.1 lnc-RPA1-39:2
5.2 lnc-PAFAH1B1-1:2