Transcript: lnc-PABPC4-1:21

Basic information

LNCipedia transcript ID: lnc-PABPC4-1:21 
LNCipedia gene ID: lnc-PABPC4-1
Location (hg38): chr1:39522280-39546187
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 681 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000440190.1; RP11-69E11.4-003; OTTHUMT00000025214.1; NONHSAT002560
Alternative gene names: ENSG00000182109.3; RP11-69E11.4; OTTHUMG00000008392.3; ENSG00000182109.7; AL365277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.0993 non-coding 
CPAT coding probability 80.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PABPC4-1:21 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PABPC4-2:1
4.0 lnc-PABPC4-1:21
4.1 lnc-PABPC4-1:21
5.0 lnc-PABPC4-1:21
5.1 lnc-PABPC4-1:21
5.2 lnc-PABPC4-1:21