Transcript: lnc-OTX2-4:1

Basic information

LNCipedia transcript ID: lnc-OTX2-4:1 
LNCipedia gene ID: lnc-OTX2-4
Location (hg38): chr14:56417521-56421777
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 396 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT037046; FPKM1_group_9040_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.19 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTX2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1085N6.3.1-4:1
4.0 lnc-RP11-1085N6.3.1-4:1
4.1 lnc-RP11-1085N6.3.1-4:1
5.0 lnc-RP11-1085N6.3.1-4:1
5.1 lnc-RTN1-38:1
5.2 lnc-OTX2-4:1