Transcript: lnc-OSCAR-1:1

Basic information

LNCipedia transcript ID: lnc-OSCAR-1:1 
LNCipedia gene ID: lnc-OSCAR-1
Location (hg38): chr19:54113706-54114214
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 372 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421718.1; AC012314.6-001; OTTHUMT00000141422.1; NONHSAT067862
Alternative gene names: ENSG00000231374.1; AC012314.6; OTTHUMG00000066042.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.6035 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OSCAR-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OSCAR-1:1
4.0 lnc-OSCAR-1:1
4.1 lnc-OSCAR-1:1
5.0 lnc-OSCAR-1:1
5.1 lnc-TMC4-10:1
5.2 lnc-OSCAR-1:1