Transcript: lnc-OSBPL9-2:1

Basic information

LNCipedia transcript ID: lnc-OSBPL9-2:1 
LNCipedia gene ID: lnc-OSBPL9-2
Ensembl Gene ID: ENSG00000238140
Ensembl Transcript ID: ENST00000424246
Location (hg38): chr1:51461721-51463416
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 678 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424246.1; RP11-253A20.1-001; OTTHUMT00000022587.1; NONHSAT003199
Alternative gene names: ENSG00000238140.1; RP11-253A20.1; OTTHUMG00000008236.1; AC104170.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.6905 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OSBPL9-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OSBPL9-2:1
4.0 lnc-OSBPL9-2:1
4.1 lnc-OSBPL9-2:1
5.0 lnc-OSBPL9-2:1
5.1 lnc-CDKN2C-14:1
5.2 lnc-OSBPL9-2:1