Transcript: lnc-OR4N4-1:6

Basic information

LNCipedia transcript ID: lnc-OR4N4-1:6 
LNCipedia gene ID: lnc-OR4N4-1
Location (hg38): chr15:22001665-22059901
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 561 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000557855.1; RP11-69H14.6-012; OTTHUMT00000417622.1; NONHSAT040717
Alternative gene names: ENSG00000259176.1; RP11-69H14.6; OTTHUMG00000172277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.5911 non-coding 
CPAT coding probability 6.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4N4-1:6 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4N4-1:6
4.0 lnc-OR4N4-1:6
4.1 lnc-OR4N4-1:6
5.0 lnc-OR4N4-1:6
5.1 lnc-SNRPN-57:10
5.2 lnc-OR4N4-1:6