Transcript: lnc-OR4N4-1:5

Basic information

LNCipedia transcript ID: lnc-OR4N4-1:5 
LNCipedia gene ID: lnc-OR4N4-1
Location (hg38): chr15:21990098-21994446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000561052.1; RP11-69H14.6-003; OTTHUMT00000417621.1; NONHSAT040716
Alternative gene names: ENSG00000259176.1; RP11-69H14.6; OTTHUMG00000172277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9457 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4N4-1:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4N4-1:5
4.0 lnc-OR4N4-1:5
4.1 lnc-OR4N4-1:5
5.0 lnc-OR4N4-1:5
5.1 lnc-SNRPN-57:8
5.2 lnc-OR4N4-1:5