Transcript: lnc-OR4N4-1:3

Basic information

LNCipedia transcript ID: lnc-OR4N4-1:3 
LNCipedia gene ID: lnc-OR4N4-1
Ensembl Gene ID: ENSG00000284500
Ensembl Transcript ID: ENST00000640932
Location (hg38): chr15:21990080-22002534
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558584.1; RP11-69H14.6-014; OTTHUMT00000417618.1; NONHSAT040713; NR_110116; ENST00000619069.4; ENST00000640932.1
Alternative gene names: ENSG00000259176.1; RP11-69H14.6; OTTHUMG00000172277.1; ENSG00000259176.5; ENSG00000284500.1; AC134980.1; ENSG00000284500.2; AC134980.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.6461 non-coding 
CPAT coding probability 30.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4N4-1:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4N4-1:3
4.0 lnc-OR4N4-1:3
4.1 lnc-OR4N4-1:3
5.0 lnc-OR4N4-1:3
5.1 lnc-SNRPN-57:4
5.2 lnc-OR4N4-1:3