Transcript: lnc-OR4F5-2:1

Basic information

LNCipedia transcript ID: lnc-OR4F5-2:1 
LNCipedia gene ID: lnc-OR4F5-2
Ensembl Gene ID: ENSG00000241599
Ensembl Transcript ID: ENST00000496488
Location (hg38): chr1:160446-161525
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000119; ENST00000496488; ENST00000496488.1; RP11-34P13.9-001; OTTHUMT00000007169.1; NONHSAT000038
Alternative gene names: XLOC_000001; linc-OR4F16-10; ENSG00000241599; RP11-34P13.9; ENSG00000241599.1; OTTHUMG00000002525.1; AL627309.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.4796 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F5-1:1
3.1 lnc-OR4F5-2:1
4.0 lnc-OR4F5-2:1
4.1 lnc-OR4F5-2:1
5.0 lnc-OR4F5-2:1
5.1 lnc-VAMP3-143:1
5.2 lnc-OR4F5-2:1