Transcript: lnc-OR4F3-5:9

Basic information

LNCipedia transcript ID: lnc-OR4F3-5:9 
LNCipedia gene ID: lnc-OR4F3-5
RefSeq ID: NR_028325
Location (hg38): chr5:181323506-181328195
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4370 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT105953; NR_028322; NR_028325; NR_028325.1
Alternative gene names: LOC100132062


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 93.1427 coding 
CPAT coding probability 99.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F3-5:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC138035.1-2:4
4.0 lnc-AC138035.1-2:4
4.1 lnc-AC138035.1-2:4
5.0 lnc-AC138035.1-2:4
5.1 lnc-SQSTM1-32:9
5.2 lnc-OR4F3-5:9