Transcript: lnc-OR4F3-5:8

Basic information

LNCipedia transcript ID: lnc-OR4F3-5:8 
LNCipedia gene ID: lnc-OR4F3-5
Ensembl Gene ID: ENSG00000238035
Ensembl Transcript ID: ENST00000604354
Location (hg38): chr5:181316368-181324685
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1066 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT105952; ENST00000604354.1
Alternative gene names: ENSG00000238035.4; AC138035.2; ENSG00000238035.8; AC138035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.912 non-coding 
CPAT coding probability 72.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F3-5:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC138035.1-2:3
4.0 lnc-AC138035.1-2:3
4.1 lnc-AC138035.1-2:3
5.0 lnc-AC138035.1-2:3
5.1 lnc-SQSTM1-32:8
5.2 lnc-OR4F3-5:8