Transcript: lnc-OR3A2-1:8

Basic information

LNCipedia transcript ID: lnc-OR3A2-1:8 
LNCipedia gene ID: lnc-OR3A2-1
Location (hg38): chr17:3278775-3386293
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 586 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000573491.1; RP11-64J4.2-001; OTTHUMT00000438371.1; NONHSAT144998; ENST00000573491.5
Alternative gene names: ENSG00000262670.1; RP11-64J4.2; OTTHUMG00000177668.1; ENSG00000262670.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 133.64 coding 
CPAT coding probability 43.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR3A2-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR3A1-1:2
4.0 lnc-OR3A1-1:2
4.1 lnc-OR3A2-1:8
5.0 lnc-OR3A2-1:8
5.1 lnc-RPH3AL-85:8
5.2 lnc-OR3A2-1:8