Transcript: lnc-OR2F1-1:2

Basic information

LNCipedia transcript ID: lnc-OR2F1-1:2 
LNCipedia gene ID: lnc-OR2F1-1
Location (hg38): chr7:143958963-143997312
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 405 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000470988.1; RP4-669B10.3-002; OTTHUMT00000349568.1; NONHSAT123894
Alternative gene names: ENSG00000243583.1; RP4-669B10.3; OTTHUMG00000157766.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0055 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2F1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR2F1-1:2
4.0 lnc-OR2F1-1:2
4.1 lnc-OR2F1-1:2
5.0 lnc-OR2F1-1:2
5.1 lnc-ADCK2-54:4
5.2 lnc-OR2F1-1:2