Transcript: lnc-OPRD1-1:1

Basic information

LNCipedia transcript ID: lnc-OPRD1-1:1 
LNCipedia gene ID: lnc-OPRD1-1
Location (hg38): chr1:28867575-28871267
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1746 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000174; ENST00000443593; ENST00000443593.1; RP1-212P9.2-001; OTTHUMT00000010343.1; NONHSAT001998
Alternative gene names: XLOC_000110; linc-EPB41; ENSG00000226852; RP1-212P9.2; ENSG00000226852.1; OTTHUMG00000003650.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.6401 non-coding 
CPAT coding probability 4.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OPRD1-1:1 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OPRD1-1:1
3.1 lnc-OPRD1-1:1
4.0 lnc-OPRD1-1:1
4.1 lnc-OPRD1-1:1
5.0 lnc-OPRD1-1:1
5.1 lnc-RAB42-5:1
5.2 lnc-OPRD1-1:1