Transcript: lnc-ONECUT2-3:1

Basic information

LNCipedia transcript ID: lnc-ONECUT2-3:1 
LNCipedia gene ID: lnc-ONECUT2-3
Ensembl Gene ID: ENSG00000277837
Ensembl Transcript ID: ENST00000620778
Location (hg38): chr18:57427133-57432112
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4980 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620778.1
Alternative gene names: ENSG00000277837.1; RP11-714M23.2; AC090340.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.8655 non-coding 
CPAT coding probability 47.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ONECUT2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ONECUT2-3:1
4.1 lnc-ONECUT2-3:1
5.0 lnc-ONECUT2-3:1
5.1 lnc-WDR7-12:1
5.2 lnc-ONECUT2-3:1