Transcript: lnc-OLR1-3:1

Basic information

LNCipedia transcript ID: lnc-OLR1-3:1 
LNCipedia gene ID: lnc-OLR1-3
Location (hg38): chr12:10217863-10219751
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 662 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000509307.2; RP11-656E20.4-001; OTTHUMT00000400107.1; NONHSAT026874
Alternative gene names: ENSG00000245856.3; RP11-656E20.4; OTTHUMG00000168530.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7284 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OLR1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OLR1-3:1
4.0 lnc-OLR1-3:1
4.1 lnc-OLR1-3:1
5.0 lnc-OLR1-3:1
5.1 lnc-M6PR-35:1
5.2 lnc-OLR1-3:1