Transcript: lnc-ODR4-1:2

Basic information

LNCipedia transcript ID: lnc-ODR4-1:2 
LNCipedia gene ID: lnc-ODR4-1
Ensembl Gene ID: ENSG00000229739
Ensembl Transcript ID: ENST00000429768
Location (hg38): chr1:186451081-186451749
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 314 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429768.1; RP11-295K2.3-001; OTTHUMT00000086360.1; NONHSAT008449
Alternative gene names: ENSG00000229739.1; RP11-295K2.3; OTTHUMG00000035581.1; ENSG00000229739.2; AL596220.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.8317 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ODR4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf27-1:1
4.0 lnc-C1orf27-1:1
4.1 lnc-C1orf27-1:1
5.0 lnc-C1orf27-1:1
5.1 lnc-C1orf21-43:2
5.2 lnc-ODR4-1:2