Transcript: lnc-ODF1-1:4

Basic information

LNCipedia transcript ID: lnc-ODF1-1:4 
LNCipedia gene ID: lnc-ODF1-1
Ensembl Gene ID: ENSG00000253633
Ensembl Transcript ID: ENST00000523572
Location (hg38): chr8:102528755-102529801
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523572.1
Alternative gene names: ENSG00000253633.1; KB-1980E6.3; AP002852.2; AP002852.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -154.0389 non-coding 
CPAT coding probability 4.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ODF1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-KB-1980E6.3.1-1:5
4.1 lnc-KB-1980E6.3.1-1:5
5.0 lnc-KB-1980E6.3.1-1:5
5.1 lnc-COLEC10-93:2
5.2 lnc-ODF1-1:4