Transcript: lnc-NXPE2-1:1

Basic information

LNCipedia transcript ID: lnc-NXPE2-1:1 
LNCipedia gene ID: lnc-NXPE2-1
Location (hg38): chr11:115174977-115175324
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 301 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000546273; ENST00000546273.1; RP11-713B9.1-001; OTTHUMT00000398926.1; NONHSAT024298
Alternative gene names: ENSG00000256558; RP11-713B9.1; ENSG00000256558.1; OTTHUMG00000168233.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.7516 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-1:1 no no no no

Available literature

  1. Yao (2014), Decreased expression of a novel lncRNA CADM1-AS1 is associated with poor prognosis in patients with clear cell renal cell carcinomas., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-1:1
3.1 lnc-FAM55B-1:1
4.0 lnc-FAM55B-1:1
4.1 lnc-FAM55B-1:1
5.0 lnc-FAM55B-1:1
5.1 lnc-PTS-49:1
5.2 lnc-NXPE2-1:1