Transcript: lnc-NUTM1-5:7

Basic information

LNCipedia transcript ID: lnc-NUTM1-5:7 
LNCipedia gene ID: lnc-NUTM1-5
Ensembl Gene ID: ENSG00000250007
Ensembl Transcript ID: ENST00000558707
Location (hg38): chr15:34755162-34790173
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 588 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558707.1; RP11-814P5.1-002; OTTHUMT00000417522.1; NONHSAT041606
Alternative gene names: ENSG00000250007.2; RP11-814P5.1; OTTHUMG00000172256.1; ENSG00000250007.6; AC087457.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.4434 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUTM1-5:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC114546.1-3:2
4.0 lnc-AC114546.1-3:2
4.1 lnc-AC114546.1-3:2
5.0 lnc-AC114546.1-3:2
5.1 lnc-TMEM62-137:7
5.2 lnc-NUTM1-5:7