Transcript: lnc-NUP35-4:4

Basic information

LNCipedia transcript ID: lnc-NUP35-4:4 
LNCipedia gene ID: lnc-NUP35-4
Ensembl Gene ID: ENSG00000272800
Ensembl Transcript ID: ENST00000608537
Location (hg38): chr2:183214319-183215400
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1082 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608537.1
Alternative gene names: ENSG00000272800.1; RP11-438L19.1; AC021851.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -195.5374 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUP35-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUP35-2:4
4.0 lnc-NUP35-4:4
4.1 lnc-NUP35-4:4
5.0 lnc-NUP35-4:4
5.1 lnc-ITGAV-16:4
5.2 lnc-NUP35-4:4