Transcript: lnc-NUDT3-1:1

Basic information

LNCipedia transcript ID: lnc-NUDT3-1:1 
LNCipedia gene ID: lnc-NUDT3-1
Location (hg38): chr6:34279606-34281321
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1642 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012702; NONHSAT112122
Alternative gene names: XLOC_005690; linc-C6orf1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.4461 non-coding 
CPAT coding probability 21.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDT3-1:1 yes no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUDT3-1:1
3.1 lnc-NUDT3-1:1
4.0 lnc-NUDT3-1:1
4.1 lnc-NUDT3-1:1
5.0 lnc-NUDT3-1:1
5.1 lnc-SPDEF-9:3
5.2 lnc-NUDT3-1:1