Transcript: lnc-NUDCD2-2:2

Basic information

LNCipedia transcript ID: lnc-NUDCD2-2:2 
LNCipedia gene ID: lnc-NUDCD2-2
Location (hg38): chr5:163012265-163437293
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 448 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000458002.2; RP11-541P9.3-001; OTTHUMT00000372922.1; NONHSAT104891; ENST00000458002.6
Alternative gene names: ENSG00000250061.1; RP11-541P9.3; OTTHUMG00000163326.2; ENSG00000250061.5; AC091976.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.5205 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDCD2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUDCD2-2:2
4.0 lnc-NUDCD2-2:2
4.1 lnc-NUDCD2-2:2
5.0 lnc-NUDCD2-2:2
5.1 lnc-FAM71B-44:7
5.2 lnc-NUDCD2-2:2