Transcript: lnc-NUCB1-1:1

Basic information

LNCipedia transcript ID: lnc-NUCB1-1:1 
LNCipedia gene ID: lnc-NUCB1-1
Ensembl Gene ID: ENSG00000260366
Ensembl Transcript ID: ENST00000569130
Location (hg38): chr19:48926171-48926444
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 274 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569130.1; CTD-2639E6.4-001; OTTHUMT00000431054.1; NONHSAT067126
Alternative gene names: ENSG00000260366.1; CTD-2639E6.4; OTTHUMG00000175774.1; AC026803.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1334 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUCB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUCB1-1:1
4.0 lnc-NUCB1-1:1
4.1 lnc-NUCB1-1:1
5.0 lnc-NUCB1-1:1
5.1 lnc-RPS11-28:1
5.2 lnc-NUCB1-1:1