Transcript: lnc-NTN1-2:4

Basic information

LNCipedia transcript ID: lnc-NTN1-2:4 
LNCipedia gene ID: lnc-NTN1-2
Ensembl Gene ID: ENSG00000265975
Ensembl Transcript ID: ENST00000578788
Location (hg38): chr17:8967523-8976995
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578788.1; CTB-41I6.2-001; OTTHUMT00000441335.1; NONHSAT145574
Alternative gene names: ENSG00000265975.1; CTB-41I6.2; OTTHUMG00000178279.1; AC002091.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.5543 non-coding 
CPAT coding probability 10.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTN1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NTN1-1:1
4.0 lnc-NTN1-2:4
4.1 lnc-NTN1-2:4
5.0 lnc-NTN1-2:4
5.1 lnc-NTN1-2:4
5.2 lnc-NTN1-2:4