Transcript: lnc-NRP1-2:1

Basic information

LNCipedia transcript ID: lnc-NRP1-2:1 
LNCipedia gene ID: lnc-NRP1-2
Location (hg38): chr10:32958486-32960504
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439974.2; RP11-479G22.3-001; OTTHUMT00000047507.2; NONHSAT012665
Alternative gene names: ENSG00000244336.2; RP11-479G22.3; OTTHUMG00000017930.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -320.2564 non-coding 
CPAT coding probability 9.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NRP1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRP1-2:1
4.0 lnc-NRP1-2:1
4.1 lnc-NRP1-2:1
5.0 lnc-NRP1-2:1
5.1 lnc-CUL2-22:1
5.2 lnc-NRP1-2:1