Transcript: lnc-NRN1-7:1

Basic information

LNCipedia transcript ID: lnc-NRN1-7:1 
LNCipedia gene ID: lnc-NRN1-7
Ensembl Gene ID: ENSG00000270174
Ensembl Transcript ID: ENST00000602500
RefSeq ID: NR_110842
Location (hg38): chr6:5664985-5695272
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 806 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT107522; ENST00000602500.1; NR_110842.1
Alternative gene names: ENSG00000270174.1; RP1-256G22.2; AL022097.1; LOC101927950


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.1937 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NRN1-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRN1-7:1
4.0 lnc-NRN1-7:1
4.1 lnc-NRN1-7:1
5.0 lnc-NRN1-7:1
5.1 lnc-ECI2-114:1
5.2 lnc-NRN1-7:1