Transcript: lnc-NRN1-1:1

Basic information

LNCipedia transcript ID: lnc-NRN1-1:1 
LNCipedia gene ID: lnc-NRN1-1
Location (hg38): chr6:5874931-5875870
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011440; ENST00000444978; ENST00000444978.1; RP3-380B8.3-001; OTTHUMT00000039755.1; NONHSAT107530
Alternative gene names: XLOC_005593; linc-LYRM4; ENSG00000230770; RP3-380B8.3; ENSG00000230770.1; OTTHUMG00000014185.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -682.7933 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NRN1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRN1-1:1
3.1 lnc-NRN1-1:1
4.0 lnc-NRN1-1:1
4.1 lnc-NRN1-1:1
5.0 lnc-NRN1-1:1
5.1 lnc-ECI2-131:1
5.2 lnc-NRN1-1:1