Transcript: lnc-NPR2-1:2

Basic information

LNCipedia transcript ID: lnc-NPR2-1:2 
LNCipedia gene ID: lnc-NPR2-1
Ensembl Gene ID: ENSG00000227388
Ensembl Transcript ID: ENST00000431981
Location (hg38): chr9:35772311-35790432
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431981.2; RP11-112J3.16-001; OTTHUMT00000052387.1; NONHSAT130975
Alternative gene names: ENSG00000227388.2; RP11-112J3.16; OTTHUMG00000019884.2; AL133410.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.2219 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPR2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPR2-1:2
4.0 lnc-NPR2-1:2
4.1 lnc-NPR2-1:2
5.0 lnc-NPR2-1:2
5.1 lnc-RECK-8:3
5.2 lnc-NPR2-1:2

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