Transcript: lnc-NPIPB7-1:1

Basic information

LNCipedia transcript ID: lnc-NPIPB7-1:1 
LNCipedia gene ID: lnc-NPIPB7-1
Ensembl Gene ID: ENSG00000270118
Ensembl Transcript ID: ENST00000602838
Location (hg38): chr16:28454141-28454511
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 371 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT141487; ENST00000602838.1
Alternative gene names: ENSG00000270118.1; RP11-57A19.5; AC138894.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9999 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPIPB7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPIPL1-1:1
4.0 lnc-NPIPL1-1:1
4.1 lnc-NPIPL1-1:1
5.0 lnc-NPIPL1-1:1
5.1 lnc-SULT1A2-6:1
5.2 lnc-NPIPB7-1:1