Transcript: lnc-NPIPB11-4:2

Basic information

LNCipedia transcript ID: lnc-NPIPB11-4:2 
LNCipedia gene ID: lnc-NPIPB11-4
Ensembl Gene ID: ENSG00000273582
Ensembl Transcript ID: ENST00000620963
Location (hg38): chr16:29225594-29226348
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 359 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620963.1
Alternative gene names: ENSG00000273582.1; RP11-426C22.7; AC009093.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.1381 non-coding 
CPAT coding probability 3.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPIPB11-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-231C14.2.1-4:2
4.1 lnc-RP11-231C14.2.1-4:2
5.0 lnc-RP11-231C14.2.1-4:2
5.1 lnc-SULT1A2-28:2
5.2 lnc-NPIPB11-4:2