Transcript: lnc-NPBWR1-1:2

Basic information

LNCipedia transcript ID: lnc-NPBWR1-1:2 
LNCipedia gene ID: lnc-NPBWR1-1
Ensembl Gene ID: ENSG00000254687
Ensembl Transcript ID: ENST00000524425
Location (hg38): chr8:53177587-53242683
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 826 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524425.1; RP11-162D9.3-002; OTTHUMT00000382739.1; NONHSAT126580
Alternative gene names: ENSG00000254687.1; RP11-162D9.3; OTTHUMG00000165220.1; AC009646.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.3594 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPBWR1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPBWR1-1:2
4.0 lnc-NPBWR1-1:2
4.1 lnc-NPBWR1-1:2
5.0 lnc-NPBWR1-1:2
5.1 lnc-SDCBP-81:2
5.2 lnc-NPBWR1-1:2