Transcript: lnc-NPAS2-1:4

Basic information

LNCipedia transcript ID: lnc-NPAS2-1:4 
LNCipedia gene ID: lnc-NPAS2-1
Location (hg38): chr2:100740034-100741213
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004858; NONHSAT072793
Alternative gene names: XLOC_001591; linc-NPAS2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.9896 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAS2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPAS2-1:4
3.1 lnc-NPAS2-1:4
4.0 lnc-NPAS2-1:4
4.1 lnc-NPAS2-1:4
5.0 lnc-NPAS2-1:4
5.1 lnc-SLC9A4-43:4
5.2 lnc-NPAS2-1:4